J3_8P09_013

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

8P09|1|2|U|224, 8P09|1|2|C|225, 8P09|1|2|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P09|1|2|C|220
8P09|1|2|A|221
8P09|1|2|G|222
8P09|1|2|A|223
8P09|1|2|U|224
8P09|1|2|C|225
8P09|1|2|A|226
8P09|1|2|A|227
8P09|1|2|A|228
8P09|1|2|A|229
8P09|1|2|C|230
8P09|1|2|C|231
8P09|1|2|A|232
8P09|1|2|A|233
8P09|1|2|C|234
8P09|1|2|C|235
*
8P09|1|2|G|274
8P09|1|2|C|275
8P09|1|2|U|276
8P09|1|2|U|277
8P09|1|2|U|278
8P09|1|2|G|279
*
8P09|1|2|C|286
8P09|1|2|U|287
8P09|1|2|A|288
8P09|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11