J3_8P17_002

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P17_002 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.067

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8P17|1|1|C|698
8P17|1|1|A|699
8P17|1|1|G|700
*
8P17|1|1|C|732
8P17|1|1|G|733
8P17|1|1|A|734
8P17|1|1|A|735
8P17|1|1|C|736
*
8P17|1|1|G|760
8P17|1|1|A|761
8P17|1|1|U|762
8P17|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2