J3_8P17_030

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P17_030 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0568

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P17|1|2|G|46
8P17|1|2|C|47
*
8P17|1|2|G|361
8P17|1|2|G|362
8P17|1|2|A|363
8P17|1|2|A|364
8P17|1|2|U|365
8P17|1|2|A|366
8P17|1|2|U|367
*
8P17|1|2|A|393
8P17|1|2|G|394
8P17|1|2|C|395

Current chains

Chain 2

16S RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

Small ribosomal subunit protein bS16