J3_8P18_011

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P18_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0831

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8P18|1|2|C|936
8P18|1|2|A|937
8P18|1|2|A|938
8P18|1|2|G|939
*
8P18|1|2|C|1344
8P18|1|2|U|1345
8P18|1|2|A|1346
8P18|1|2|G|1347
8P18|1|2|U|1348
8P18|1|2|A|1349
8P18|1|2|A|1350
*
8P18|1|2|U|1372
8P18|1|2|G|1373
8P18|1|2|A|1374
8P18|1|2|A|1375
8P18|1|2|U|1376
8P18|1|2|A|1377
8P18|1|2|C|1378
8P18|1|2|G|1379

Current chains

Chain 2

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9