J3_8P2F_005

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2F_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0909

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8P2F|1|A|C|1335
8P2F|1|A|G|1336
8P2F|1|A|A|1337
8P2F|1|A|U|1338
8P2F|1|A|U|1339
8P2F|1|A|G|1340
*
8P2F|1|A|C|1669
8P2F|1|A|A|1670
8P2F|1|A|A|1671
*
8P2F|1|A|U|1683
8P2F|1|A|A|1684
8P2F|1|A|A|1685
8P2F|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains