J3_8P2F_026
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8P2F|1|A|A|2415, 8P2F|1|A|U|2417, 8P2F|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2F_026 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1133
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8P2F|1|A|G|2309
8P2F|1|A|C|2310
8P2F|1|A|U|2311
*
8P2F|1|A|A|2411
8P2F|1|A|C|2412
8P2F|1|A|U|2413
8P2F|1|A|U|2414
8P2F|1|A|A|2415
8P2F|1|A|G|2416
8P2F|1|A|U|2417
8P2F|1|A|G|2418
8P2F|1|A|A|2419
8P2F|1|A|U|2420
8P2F|1|A|C|2421
8P2F|1|A|C|2422
*
8P2F|1|A|G|2448
8P2F|1|A|C|2449
8P2F|1|A|U|2450
8P2F|1|A|C|2451
8P2F|1|A|A|2452
8P2F|1|A|A|2453
8P2F|1|A|C|2454
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33 1
- Chain 8
- 50S ribosomal protein L35
- Chain D
- Transfer RNA; tRNA
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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