J3_8P2G_001

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

ACGUUACUAACG*UGC*GAUUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2G_001 not in the Motif Atlas

Homologous match to J3_4WF9_001

Geometric discrepancy: 0.1096

The information below is about J3_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47707.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

Number of instances in this motif group

1

Unit IDs

8P2G|1|A|A|56
8P2G|1|A|C|57
8P2G|1|A|G|58
8P2G|1|A|U|59
8P2G|1|A|U|60
8P2G|1|A|A|61
8P2G|1|A|C|62
8P2G|1|A|U|63
8P2G|1|A|A|64
8P2G|1|A|A|65
8P2G|1|A|C|66
8P2G|1|A|G|67
*
8P2G|1|A|U|74
8P2G|1|A|G|75
8P2G|1|A|C|76
*
8P2G|1|A|G|109
8P2G|1|A|A|110
8P2G|1|A|U|111
8P2G|1|A|U|112
8P2G|1|A|U|113

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23