J3_8P2G_004

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2G_004 not in the Motif Atlas

Homologous match to J3_7RQB_006

Geometric discrepancy: 0.2559

The information below is about J3_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2G|1|A|G|1099
8P2G|1|A|G|1100
8P2G|1|A|A|1101
*
8P2G|1|A|U|1125
8P2G|1|A|U|1126
8P2G|1|A|U|1127
8P2G|1|A|A|1128
8P2G|1|A|A|1129
8P2G|1|A|A|1130
8P2G|1|A|G|1131
*
8P2G|1|A|C|1146
8P2G|1|A|A|1147
8P2G|1|A|C|1148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36