J3_8P2G_007

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2G_007 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.205

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8P2G|1|A|U|2118
8P2G|1|A|U|2119
8P2G|1|A|G|2120
*
8P2G|1|A|C|2223
8P2G|1|A|U|2224
8P2G|1|A|A|2225
8P2G|1|A|A|2226
8P2G|1|A|C|2227
8P2G|1|A|C|2228
*
8P2G|1|A|G|2249
8P2G|1|A|A|2250
8P2G|1|A|G|2251
8P2G|1|A|A|2252
8P2G|1|A|C|2253
8P2G|1|A|A|2254
8P2G|1|A|G|2255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain G

50S ribosomal protein L2