J3_8P2H_002

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8P2H|1|A|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0719

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8P2H|1|A|U|728
8P2H|1|A|G|729
8P2H|1|A|A|730
8P2H|1|A|U|731
8P2H|1|A|C|732
8P2H|1|A|U|733
8P2H|1|A|A|734
*
8P2H|1|A|U|818
8P2H|1|A|A|819
8P2H|1|A|G|820
*
8P2H|1|A|C|836
8P2H|1|A|G|837
8P2H|1|A|A|838
8P2H|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2