3D structure

PDB id
8P2H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.49 Å

Loop

Sequence
UUG*CUAACC*GAGACAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P2H_007 not in the Motif Atlas
Homologous match to J3_4WF9_007
Geometric discrepancy: 0.2059
The information below is about J3_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07703.1
Basepair signature
cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

8P2H|1|A|U|2118
8P2H|1|A|U|2119
8P2H|1|A|G|2120
*
8P2H|1|A|C|2223
8P2H|1|A|U|2224
8P2H|1|A|A|2225
8P2H|1|A|A|2226
8P2H|1|A|C|2227
8P2H|1|A|C|2228
*
8P2H|1|A|G|2249
8P2H|1|A|A|2250
8P2H|1|A|G|2251
8P2H|1|A|A|2252
8P2H|1|A|C|2253
8P2H|1|A|A|2254
8P2H|1|A|G|2255

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L28
Chain G
50S ribosomal protein L2

Coloring options:


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