J3_8P2H_026

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_026 not in the Motif Atlas

Homologous match to J3_9DFE_018

Geometric discrepancy: 0.3691

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8P2H|1|A|C|2816
8P2H|1|A|A|2817
*
8P2H|1|A|U|2826
8P2H|1|A|A|2827
8P2H|1|A|U|2828
8P2H|1|A|A|2829
8P2H|1|A|A|2830
8P2H|1|A|G|2831
*
8P2H|1|A|C|2909
8P2H|1|A|G|2910
8P2H|1|A|A|2911
8P2H|1|A|A|2912
8P2H|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3