J3_8P2H_033

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_033 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0813

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8P2H|1|a|C|945
8P2H|1|a|A|946
8P2H|1|a|A|947
8P2H|1|a|G|948
*
8P2H|1|a|C|1354
8P2H|1|a|U|1355
8P2H|1|a|A|1356
8P2H|1|a|G|1357
8P2H|1|a|U|1358
8P2H|1|a|A|1359
8P2H|1|a|A|1360
*
8P2H|1|a|U|1382
8P2H|1|a|G|1383
8P2H|1|a|A|1384
8P2H|1|a|A|1385
8P2H|1|a|U|1386
8P2H|1|a|A|1387
8P2H|1|a|C|1388
8P2H|1|a|G|1389

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9