J3_8P2K_001

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1858

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8P2K|1|A2|A|817
8P2K|1|A2|G|818
8P2K|1|A2|A|819
8P2K|1|A2|G|820
*
8P2K|1|A2|C|830
8P2K|1|A2|A|831
8P2K|1|A2|G|832
*
8P2K|1|A2|C|844
8P2K|1|A2|U|845
8P2K|1|A2|G|846
8P2K|1|A2|G|847
8P2K|1|A2|A|848
8P2K|1|A2|U|849

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24