J3_8P2K_026

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

8P2K|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|A2|C|223
8P2K|1|A2|A|224
8P2K|1|A2|G|225
8P2K|1|A2|A|226
8P2K|1|A2|U|227
8P2K|1|A2|C|228
8P2K|1|A2|A|229
8P2K|1|A2|A|230
8P2K|1|A2|A|231
8P2K|1|A2|A|232
8P2K|1|A2|C|233
8P2K|1|A2|C|234
8P2K|1|A2|A|235
8P2K|1|A2|A|236
8P2K|1|A2|C|237
8P2K|1|A2|C|238
8P2K|1|A2|C|239
*
8P2K|1|A2|G|280
8P2K|1|A2|G|281
8P2K|1|A2|C|282
8P2K|1|A2|G|283
8P2K|1|A2|G|284
8P2K|1|A2|C|285
8P2K|1|A2|U|286
8P2K|1|A2|U|287
8P2K|1|A2|U|288
8P2K|1|A2|G|289
*
8P2K|1|A2|C|296
8P2K|1|A2|U|297
8P2K|1|A2|A|298
8P2K|1|A2|G|299

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11