J3_8P2K_033

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8P2K|1|B5|G|219, 8P2K|1|B5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|B5|C|196
8P2K|1|B5|A|197
8P2K|1|B5|A|198
8P2K|1|B5|G|199
*
8P2K|1|B5|C|215
8P2K|1|B5|C|216
8P2K|1|B5|C|217
8P2K|1|B5|A|218
8P2K|1|B5|G|219
8P2K|1|B5|C|220
8P2K|1|B5|C|221
8P2K|1|B5|C|222
8P2K|1|B5|G|223
8P2K|1|B5|U|224
8P2K|1|B5|G|225
8P2K|1|B5|G|226
8P2K|1|B5|A|227
8P2K|1|B5|C|228
*
8P2K|1|B5|G|240
8P2K|1|B5|G|241
8P2K|1|B5|U|242
8P2K|1|B5|A|243
8P2K|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26