J3_8P2K_037

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|B5|C|451
8P2K|1|B5|A|452
8P2K|1|B5|G|453
8P2K|1|B5|U|454
8P2K|1|B5|C|455
*
8P2K|1|B5|G|695
8P2K|1|B5|U|696
8P2K|1|B5|G|697
8P2K|1|B5|C|698
8P2K|1|B5|G|699
*
8P2K|1|B5|C|1236
8P2K|1|B5|G|1237
8P2K|1|B5|A|1238
8P2K|1|B5|U|1239
8P2K|1|B5|G|1240

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a

Chain Br

60S ribosomal protein L28