J3_8P85_063

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8P85|1|AR|A|3172, 8P85|1|AR|G|3173, 8P85|1|AR|A|3215, 8P85|1|AR|G|3216, 8P85|1|AR|A|3218, 8P85|1|AR|G|3219, 8P85|1|AR|A|3268, 8P85|1|AR|U|3270, 8P85|1|AR|C|3272, 8P85|1|AR|U|3275, 8P85|1|AR|G|3276, 8P85|1|AR|U|3277, 8P85|1|AR|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|AR|U|3171
8P85|1|AR|A|3172
8P85|1|AR|G|3173
8P85|1|AR|A|3174
8P85|1|AR|U|3175
8P85|1|AR|G|3176
*
8P85|1|AR|C|3212
8P85|1|AR|A|3213
8P85|1|AR|U|3214
8P85|1|AR|A|3215
8P85|1|AR|G|3216
8P85|1|AR|C|3217
8P85|1|AR|A|3218
8P85|1|AR|G|3219
8P85|1|AR|G|3220
*
8P85|1|AR|C|3265
8P85|1|AR|G|3266
8P85|1|AR|A|3267
8P85|1|AR|A|3268
8P85|1|AR|U|3269
8P85|1|AR|U|3270
8P85|1|AR|G|3271
8P85|1|AR|C|3272
8P85|1|AR|A|3273
8P85|1|AR|A|3274
8P85|1|AR|U|3275
8P85|1|AR|G|3276
8P85|1|AR|U|3277
8P85|1|AR|C|3278
8P85|1|AR|A|3279

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A

Chain DH

60S ribosomal protein L33-A