J3_8P85_064

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P85_064 not in the Motif Atlas

Geometric match to J3_8P9A_065

Geometric discrepancy: 0.0383

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8P85|1|AR|C|3298
8P85|1|AR|A|3299
8P85|1|AR|U|3300
*
8P85|1|AR|A|3314
8P85|1|AR|G|3315
8P85|1|AR|A|3316
8P85|1|AR|U|3317
8P85|1|AR|G|3318
*
8P85|1|AR|C|3388
8P85|1|AR|U|3389
8P85|1|AR|G|3390

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DF

60S ribosomal protein L31-A