J3_8P85_069

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUGU*ACUCUUUG*CAU

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|sR|A|213
8P85|1|sR|G|214
8P85|1|sR|A|215
8P85|1|sR|U|216
8P85|1|sR|A|217
8P85|1|sR|A|218
8P85|1|sR|A|219
8P85|1|sR|A|220
8P85|1|sR|A|221
8P85|1|sR|A|222
8P85|1|sR|U|223
8P85|1|sR|C|224
8P85|1|sR|A|225
8P85|1|sR|A|226
8P85|1|sR|U|227
8P85|1|sR|G|228
8P85|1|sR|U|229
*
8P85|1|sR|A|236
8P85|1|sR|C|237
8P85|1|sR|U|238
8P85|1|sR|C|239
8P85|1|sR|U|240
8P85|1|sR|U|241
8P85|1|sR|U|242
8P85|1|sR|G|243
*
8P85|1|sR|C|250
8P85|1|sR|A|251
8P85|1|sR|U|252

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A