J3_8P85_082
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8P85|1|sR|U|1390, 8P85|1|sR|U|1413, 8P85|1|sR|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_082 not in the Motif Atlas
- Geometric match to J3_8P9A_083
- Geometric discrepancy: 0.0487
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8P85|1|sR|A|1336
8P85|1|sR|A|1337
8P85|1|sR|C|1338
*
8P85|1|sR|G|1386
8P85|1|sR|G|1387
8P85|1|sR|A|1388
8P85|1|sR|C|1389
8P85|1|sR|U|1390
8P85|1|sR|A|1391
*
8P85|1|sR|U|1407
8P85|1|sR|G|1408
8P85|1|sR|G|1409
8P85|1|sR|A|1410
8P85|1|sR|A|1411
8P85|1|sR|G|1412
8P85|1|sR|U|1413
8P85|1|sR|U|1414
8P85|1|sR|U|1415
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain Rb
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- Small ribosomal subunit protein uS10
- Chain d9
- Small ribosomal subunit protein uS14A
- Chain s5
- 40S ribosomal protein S5
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