J3_8P8M_022
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8P8M|1|A|C|2760, 8P8M|1|A|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8M_022 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0856
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8P8M|1|A|G|2651
8P8M|1|A|U|2652
8P8M|1|A|C|2653
*
8P8M|1|A|G|2754
8P8M|1|A|C|2755
8P8M|1|A|C|2756
8P8M|1|A|U|2757
8P8M|1|A|A|2758
8P8M|1|A|U|2759
8P8M|1|A|C|2760
8P8M|1|A|G|2761
8P8M|1|A|A|2762
8P8M|1|A|U|2763
8P8M|1|A|C|2764
8P8M|1|A|C|2765
*
8P8M|1|A|G|2793
8P8M|1|A|G|2794
8P8M|1|A|U|2795
8P8M|1|A|G|2796
8P8M|1|A|C|2797
8P8M|1|A|C|2798
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain QP
- 60S ribosomal protein L18-A
- Chain QT
- 60S ribosomal protein L21-A
- Chain RA
- 60S ribosomal protein L28
- Chain RQ
- 60S ribosomal protein L42-A
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