J3_8P8N_025
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8P8N|1|LD|U|60, 8P8N|1|LD|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8N_025 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0734
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8P8N|1|LD|A|44
8P8N|1|LD|C|45
*
8P8N|1|LD|G|58
8P8N|1|LD|A|59
8P8N|1|LD|U|60
8P8N|1|LD|A|61
8P8N|1|LD|C|62
8P8N|1|LD|G|63
8P8N|1|LD|U|64
*
8P8N|1|LD|A|96
8P8N|1|LD|A|97
8P8N|1|LD|U|98
8P8N|1|LD|C|99
8P8N|1|LD|U|100
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein eL39
- Chain QX
- 60S ribosomal protein L25
- Chain RH
- 60S ribosomal protein L35-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: