J3_8PEG_001

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8PEG|1|7|U|686, 8PEG|1|7|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PEG_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0851

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8PEG|1|7|U|683
8PEG|1|7|G|684
8PEG|1|7|A|685
8PEG|1|7|U|686
8PEG|1|7|C|687
8PEG|1|7|U|688
8PEG|1|7|A|689
*
8PEG|1|7|U|773
8PEG|1|7|G|774
8PEG|1|7|G|775
*
8PEG|1|7|C|791
8PEG|1|7|A|792
8PEG|1|7|A|793
8PEG|1|7|A|794

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain l

50S ribosomal protein L34