J3_8PEG_035

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8PEG|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PEG_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1208

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8PEG|1|A|C|990
8PEG|1|A|U|991
8PEG|1|A|U|992
8PEG|1|A|G|993
8PEG|1|A|A|994
8PEG|1|A|C|995
8PEG|1|A|A|996
8PEG|1|A|U|997
*
8PEG|1|A|A|1044
8PEG|1|A|C|1045
8PEG|1|A|A|1046
8PEG|1|A|G|1047
*
8PEG|1|A|C|1210
8PEG|1|A|U|1211
8PEG|1|A|U|1212
8PEG|1|A|A|1213
8PEG|1|A|C|1214
8PEG|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14