3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0841
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

8PHJ|1|A|C|936
8PHJ|1|A|A|937
8PHJ|1|A|A|938
8PHJ|1|A|G|939
*
8PHJ|1|A|C|1344
8PHJ|1|A|U|1345
8PHJ|1|A|A|1346
8PHJ|1|A|G|1347
8PHJ|1|A|U|1348
8PHJ|1|A|A|1349
8PHJ|1|A|A|1350
*
8PHJ|1|A|U|1372
8PHJ|1|A|G|1373
8PHJ|1|A|A|1374
8PHJ|1|A|A|1375
8PHJ|1|A|U|1376
8PHJ|1|A|A|1377
8PHJ|1|A|C|1378
8PHJ|1|A|G|1379

Current chains

Chain A
16S rRNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain G
Small ribosomal subunit protein uS7
Chain I
Small ribosomal subunit protein uS9

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