3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_011 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0597
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8PHJ|1|a|C|698
8PHJ|1|a|A|699
8PHJ|1|a|G|700
*
8PHJ|1|a|C|732
8PHJ|1|a|G|733
8PHJ|1|a|A|734
8PHJ|1|a|A|735
8PHJ|1|a|C|736
*
8PHJ|1|a|G|760
8PHJ|1|a|A|761
8PHJ|1|a|U|762
8PHJ|1|a|G|763

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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