3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
8PHJ|1|a|A|2518, 8PHJ|1|a|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_017 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0807
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

8PHJ|1|a|C|2517
8PHJ|1|a|A|2518
8PHJ|1|a|U|2519
8PHJ|1|a|C|2520
*
8PHJ|1|a|G|2545
8PHJ|1|a|U|2546
8PHJ|1|a|A|2547
*
8PHJ|1|a|U|2561
8PHJ|1|a|U|2562
8PHJ|1|a|U|2563
8PHJ|1|a|A|2564
8PHJ|1|a|A|2565
8PHJ|1|a|A|2566
8PHJ|1|a|G|2567

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain j
Large ribosomal subunit protein uL14

Coloring options:


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