J3_8PHJ_020

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_020 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0907

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8PHJ|1|A|G|46
8PHJ|1|A|C|47
*
8PHJ|1|A|G|361
8PHJ|1|A|G|362
8PHJ|1|A|A|363
8PHJ|1|A|A|364
8PHJ|1|A|U|365
8PHJ|1|A|A|366
8PHJ|1|A|U|367
*
8PHJ|1|A|A|393
8PHJ|1|A|G|394
8PHJ|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16