J3_8PHJ_033

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8PHJ|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0517

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8PHJ|1|a|G|297
8PHJ|1|a|G|298
8PHJ|1|a|A|299
8PHJ|1|a|A|300
8PHJ|1|a|G|301
*
8PHJ|1|a|C|316
8PHJ|1|a|G|317
8PHJ|1|a|C|318
8PHJ|1|a|G|319
8PHJ|1|a|A|320
8PHJ|1|a|U|321
8PHJ|1|a|A|322
8PHJ|1|a|C|323
8PHJ|1|a|A|324
8PHJ|1|a|G|325
*
8PHJ|1|a|C|337
8PHJ|1|a|G|338
8PHJ|1|a|U|339
8PHJ|1|a|A|340
8PHJ|1|a|C|341

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24