J3_8PHJ_034

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_034 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1029

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8PHJ|1|a|U|1344
8PHJ|1|a|C|1345
8PHJ|1|a|G|1346
8PHJ|1|a|A|1347
8PHJ|1|a|C|1348
8PHJ|1|a|C|1349
*
8PHJ|1|a|G|1382
8PHJ|1|a|A|1383
8PHJ|1|a|A|1384
8PHJ|1|a|A|1385
*
8PHJ|1|a|U|1402
8PHJ|1|a|A|1403

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain s

Large ribosomal subunit protein uL23