J3_8PJ2_003

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8PJ2|1|A|C|1138, 8PJ2|1|A|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ2|1|A|C|1094
8PJ2|1|A|C|1095
8PJ2|1|A|G|1096
*
8PJ2|1|A|U|1136
8PJ2|1|A|U|1137
8PJ2|1|A|C|1138
8PJ2|1|A|C|1139
8PJ2|1|A|G|1140
*
8PJ2|1|A|C|1147
8PJ2|1|A|A|1148
8PJ2|1|A|A|1149
8PJ2|1|A|A|1150
8PJ2|1|A|G|1151

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain J

40S ribosomal protein S15a

Chain K

40S ribosomal protein S21

Chain N

40S ribosomal protein SA

Chain Q

40S ribosomal protein S26