J3_8PJ4_006
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8PJ4|1|A|G|1256, 8PJ4|1|A|A|1258
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PJ4_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0746
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8PJ4|1|A|C|1237
8PJ4|1|A|U|1238
8PJ4|1|A|U|1239
8PJ4|1|A|A|1240
8PJ4|1|A|A|1241
8PJ4|1|A|U|1242
8PJ4|1|A|PSU|1243
8PJ4|1|A|U|1244
*
8PJ4|1|A|G|1255
8PJ4|1|A|G|1256
8PJ4|1|A|G|1257
8PJ4|1|A|A|1258
8PJ4|1|A|A|1259
8PJ4|1|A|A|1260
8PJ4|1|A|C|1261
8PJ4|1|A|C|1262
8PJ4|1|A|U|1263
8PJ4|1|A|C|1264
8PJ4|1|A|A|1265
8PJ4|1|A|C|1266
*
8PJ4|1|A|G|1516
8PJ4|1|A|G|1517
8PJ4|1|A|C|1518
8PJ4|1|A|U|1519
8PJ4|1|A|G|1520
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain b
- 40S ribosomal protein S15
- Chain f
- 40S ribosomal protein S18
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
Coloring options: