J3_8PJ6_017
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- U(OMG)G*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8PJ6|1|A|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PJ6_017 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1171
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PJ6|1|A|U|682
8PJ6|1|A|OMG|683
8PJ6|1|A|G|684
*
8PJ6|1|A|U|918
8PJ6|1|A|A|919
8PJ6|1|A|A|920
8PJ6|1|A|G|921
8PJ6|1|A|A|922
8PJ6|1|A|G|923
*
8PJ6|1|A|C|1019
8PJ6|1|A|A|1020
8PJ6|1|A|U|1021
8PJ6|1|A|U|1022
8PJ6|1|A|A|1023
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain G
- 40S ribosomal protein S7
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
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