J3_8PK0_003

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PK0_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1426

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8PK0|1|A|C|1930
8PK0|1|A|A|1931
8PK0|1|A|G|1932
*
8PK0|1|A|C|1942
8PK0|1|A|A|1943
8PK0|1|A|C|1944
8PK0|1|A|A|1945
8PK0|1|A|C|1946
*
8PK0|1|A|G|1970
8PK0|1|A|A|1971
8PK0|1|A|A|1972
8PK0|1|A|G|1973

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial