J3_8PK0_007
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCAAACCCACUCCACCUUACUACCAGACAACCUUAGCCA*UUACCCAAAUA*UUGAAACCUG
- Length
- 60 nucleotides
- Bulged bases
- 8PK0|1|A|C|1693, 8PK0|1|A|C|1699, 8PK0|1|A|U|1701, 8PK0|1|A|C|1707, 8PK0|1|A|A|1708, 8PK0|1|A|C|1711, 8PK0|1|A|A|1712, 8PK0|1|A|C|1715, 8PK0|1|A|U|1716, 8PK0|1|A|A|1735, 8PK0|1|A|C|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PK0|1|A|C|1684
8PK0|1|A|C|1685
8PK0|1|A|A|1686
8PK0|1|A|A|1687
8PK0|1|A|A|1688
8PK0|1|A|C|1689
8PK0|1|A|C|1690
8PK0|1|A|C|1691
8PK0|1|A|A|1692
8PK0|1|A|C|1693
8PK0|1|A|U|1694
8PK0|1|A|C|1695
8PK0|1|A|C|1696
8PK0|1|A|A|1697
8PK0|1|A|C|1698
8PK0|1|A|C|1699
8PK0|1|A|U|1700
8PK0|1|A|U|1701
8PK0|1|A|A|1702
8PK0|1|A|C|1703
8PK0|1|A|U|1704
8PK0|1|A|A|1705
8PK0|1|A|C|1706
8PK0|1|A|C|1707
8PK0|1|A|A|1708
8PK0|1|A|G|1709
8PK0|1|A|A|1710
8PK0|1|A|C|1711
8PK0|1|A|A|1712
8PK0|1|A|A|1713
8PK0|1|A|C|1714
8PK0|1|A|C|1715
8PK0|1|A|U|1716
8PK0|1|A|U|1717
8PK0|1|A|A|1718
8PK0|1|A|G|1719
8PK0|1|A|C|1720
8PK0|1|A|C|1721
8PK0|1|A|A|1722
*
8PK0|1|A|U|1729
8PK0|1|A|U|1730
8PK0|1|A|A|1731
8PK0|1|A|C|1732
8PK0|1|A|C|1733
8PK0|1|A|C|1734
8PK0|1|A|A|1735
8PK0|1|A|A|1736
8PK0|1|A|A|1737
8PK0|1|A|U|1738
8PK0|1|A|A|1739
*
8PK0|1|A|U|1758
8PK0|1|A|U|1759
8PK0|1|A|G|1760
8PK0|1|A|A|1761
8PK0|1|A|A|1762
8PK0|1|A|A|1763
8PK0|1|A|C|1764
8PK0|1|A|C|1765
8PK0|1|A|U|1766
8PK0|1|A|G|1767
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain 5
- 39S ribosomal protein L37, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain U
- 39S ribosomal protein L23, mitochondrial
- Chain V
- 39S ribosomal protein L24, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain Y
- 39S ribosomal protein L47, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: