J3_8PNN_002

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG

Length

32 nucleotides

Bulged bases

8PNN|1|1|U|117, 8PNN|1|1|G|120, 8PNN|1|1|A|121, 8PNN|1|1|U|147, 8PNN|1|1|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|1|C|113
8PNN|1|1|A|114
8PNN|1|1|A|115
8PNN|1|1|A|116
8PNN|1|1|U|117
8PNN|1|1|U|118
8PNN|1|1|U|119
8PNN|1|1|G|120
8PNN|1|1|A|121
8PNN|1|1|A|122
8PNN|1|1|A|123
8PNN|1|1|U|124
*
8PNN|1|1|A|144
8PNN|1|1|G|145
8PNN|1|1|U|146
8PNN|1|1|U|147
8PNN|1|1|G|148
8PNN|1|1|U|149
8PNN|1|1|A|150
8PNN|1|1|A|151
8PNN|1|1|U|152
8PNN|1|1|U|153
8PNN|1|1|U|154
8PNN|1|1|G|155
8PNN|1|1|G|156
8PNN|1|1|A|157
8PNN|1|1|G|158
*
8PNN|1|1|C|263
8PNN|1|1|G|264
8PNN|1|1|A|265
8PNN|1|1|A|266
8PNN|1|1|G|267

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AI

60S ribosomal protein L35-A

Chain AJ

60S ribosomal protein L36-A

Chain p

60S ribosomal protein L8-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A