J3_8PNN_005
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_005 not in the Motif Atlas
- Geometric match to J3_8P9A_046
- Geometric discrepancy: 0.0728
- The information below is about J3_8P9A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
8PNN|1|1|A|369
8PNN|1|1|U|370
8PNN|1|1|G|371
8PNN|1|1|A|372
8PNN|1|1|A|373
8PNN|1|1|A|374
8PNN|1|1|A|375
8PNN|1|1|G|376
*
8PNN|1|1|C|403
8PNN|1|1|G|404
*
8PNN|1|4|C|19
8PNN|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein L26-A
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-A
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