J3_8PNN_022

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAU*AGAUGUA*UCUG

Length

14 nucleotides

Bulged bases

8PNN|1|1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|1|C|3298
8PNN|1|1|A|3299
8PNN|1|1|U|3300
*
8PNN|1|1|A|3314
8PNN|1|1|G|3315
8PNN|1|1|A|3316
8PNN|1|1|U|3317
8PNN|1|1|G|3318
8PNN|1|1|U|3319
8PNN|1|1|A|3320
*
8PNN|1|1|U|3387
8PNN|1|1|C|3388
8PNN|1|1|U|3389
8PNN|1|1|G|3390

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3

Chain x

60S ribosomal protein L17-A