J3_8PNN_027
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8PNN|1|A|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_027 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1004
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8PNN|1|A|U|633
8PNN|1|A|G|634
8PNN|1|A|A|635
*
8PNN|1|A|U|861
8PNN|1|A|A|862
8PNN|1|A|A|863
8PNN|1|A|U|864
8PNN|1|A|A|865
*
8PNN|1|A|U|965
8PNN|1|A|A|966
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S7-A
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- 40S ribosomal protein S23-A
- Chain c
- 40S ribosomal protein S27-A
Coloring options: