J3_8PNN_036
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 8PNN|1|A|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PNN_036 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.2252
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8PNN|1|A|U|1283
8PNN|1|A|C|1284
8PNN|1|A|U|1285
8PNN|1|A|U|1286
8PNN|1|A|A|1287
8PNN|1|A|G|1288
*
8PNN|1|A|C|1327
8PNN|1|A|G|1328
8PNN|1|A|A|1329
8PNN|1|A|G|1330
8PNN|1|A|A|1331
8PNN|1|A|C|1332
*
8PNN|1|A|G|1419
8PNN|1|A|C|1420
8PNN|1|A|A|1421
8PNN|1|A|A|1422
8PNN|1|A|U|1423
8PNN|1|A|A|1424
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- Small ribosomal subunit protein uS3
- Chain R
- 40S ribosomal protein S16-A
- Chain S
- 40S ribosomal protein S17-A
- Chain V
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14A
Coloring options: