J3_8PNN_063

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8PNN|1|AR|A|3172, 8PNN|1|AR|G|3173, 8PNN|1|AR|A|3215, 8PNN|1|AR|G|3216, 8PNN|1|AR|A|3218, 8PNN|1|AR|G|3219, 8PNN|1|AR|A|3268, 8PNN|1|AR|U|3270, 8PNN|1|AR|C|3272, 8PNN|1|AR|U|3275, 8PNN|1|AR|G|3276, 8PNN|1|AR|U|3277, 8PNN|1|AR|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|AR|U|3171
8PNN|1|AR|A|3172
8PNN|1|AR|G|3173
8PNN|1|AR|A|3174
8PNN|1|AR|U|3175
8PNN|1|AR|G|3176
*
8PNN|1|AR|C|3212
8PNN|1|AR|A|3213
8PNN|1|AR|U|3214
8PNN|1|AR|A|3215
8PNN|1|AR|G|3216
8PNN|1|AR|C|3217
8PNN|1|AR|A|3218
8PNN|1|AR|G|3219
8PNN|1|AR|G|3220
*
8PNN|1|AR|C|3265
8PNN|1|AR|G|3266
8PNN|1|AR|A|3267
8PNN|1|AR|A|3268
8PNN|1|AR|U|3269
8PNN|1|AR|U|3270
8PNN|1|AR|G|3271
8PNN|1|AR|C|3272
8PNN|1|AR|A|3273
8PNN|1|AR|A|3274
8PNN|1|AR|U|3275
8PNN|1|AR|G|3276
8PNN|1|AR|U|3277
8PNN|1|AR|C|3278
8PNN|1|AR|A|3279

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A

Chain DH

60S ribosomal protein L33-A