J3_8PNN_071

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PNN_071 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.043

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

8PNN|1|sR|A|760
8PNN|1|sR|G|761
8PNN|1|sR|A|762
8PNN|1|sR|G|763
*
8PNN|1|sR|C|773
8PNN|1|sR|A|774
8PNN|1|sR|G|775
*
8PNN|1|sR|U|785
8PNN|1|sR|C|786
8PNN|1|sR|G|787
8PNN|1|sR|A|788
8PNN|1|sR|A|789
8PNN|1|sR|U|790

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A