J3_8PPK_007

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GC(OMC)CGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

8PPK|1|2|G|1274, 8PPK|1|2|G|1507, 8PPK|1|2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|G|1270
8PPK|1|2|C|1271
8PPK|1|2|OMC|1272
8PPK|1|2|C|1273
8PPK|1|2|G|1274
8PPK|1|2|G|1275
8PPK|1|2|A|1276
8PPK|1|2|C|1277
*
8PPK|1|2|G|1320
8PPK|1|2|G|1321
8PPK|1|2|G|1322
8PPK|1|2|U|1323
8PPK|1|2|G|1324
*
8PPK|1|2|U|1504
8PPK|1|2|U|1505
8PPK|1|2|A|1506
8PPK|1|2|G|1507
8PPK|1|2|A|1508
8PPK|1|2|U|1509
8PPK|1|2|G|1510
8PPK|1|2|U|1511
8PPK|1|2|C|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain j

Nsp1