J3_8PPK_013

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*C(PSU)AG

Length

29 nucleotides

Bulged bases

8PPK|1|2|C|228

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|C|223
8PPK|1|2|A|224
8PPK|1|2|G|225
8PPK|1|2|A|226
8PPK|1|2|U|227
8PPK|1|2|C|228
8PPK|1|2|A|229
8PPK|1|2|A|230
8PPK|1|2|A|231
8PPK|1|2|A|232
8PPK|1|2|C|233
8PPK|1|2|C|234
8PPK|1|2|A|235
8PPK|1|2|A|236
8PPK|1|2|C|237
8PPK|1|2|C|238
*
8PPK|1|2|G|280
8PPK|1|2|C|281
8PPK|1|2|G|282
8PPK|1|2|G|283
8PPK|1|2|C|284
8PPK|1|2|U|285
8PPK|1|2|U|286
8PPK|1|2|U|287
8PPK|1|2|G|288
*
8PPK|1|2|C|295
8PPK|1|2|PSU|296
8PPK|1|2|A|297
8PPK|1|2|G|298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11