J3_8PPK_015

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

U(OMG)GA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

8PPK|1|2|G|921

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|U|682
8PPK|1|2|OMG|683
8PPK|1|2|G|684
8PPK|1|2|A|685
*
8PPK|1|2|U|917
8PPK|1|2|U|918
8PPK|1|2|A|919
8PPK|1|2|A|920
8PPK|1|2|G|921
8PPK|1|2|A|922
8PPK|1|2|G|923
*
8PPK|1|2|C|1019
8PPK|1|2|A|1020
8PPK|1|2|U|1021
8PPK|1|2|U|1022
8PPK|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

40S ribosomal protein S11

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain X

40S ribosomal protein S23

Chain b

40S ribosomal protein S27