J3_8PPL_003

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCGG*C(PSU)UCCG*CAAAG

Length

15 nucleotides

Bulged bases

8PPL|1|A2|C|1138, 8PPL|1|A2|A|1150

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|C|1094
8PPL|1|A2|C|1095
8PPL|1|A2|G|1096
8PPL|1|A2|G|1097
*
8PPL|1|A2|C|1135
8PPL|1|A2|PSU|1136
8PPL|1|A2|U|1137
8PPL|1|A2|C|1138
8PPL|1|A2|C|1139
8PPL|1|A2|G|1140
*
8PPL|1|A2|C|1147
8PPL|1|A2|A|1148
8PPL|1|A2|A|1149
8PPL|1|A2|A|1150
8PPL|1|A2|G|1151

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AC

40S ribosomal protein S2

Chain AV

40S ribosomal protein S21

Chain AW

40S ribosomal protein S15a

Chain Aa

40S ribosomal protein S26

Chain Ab

40S ribosomal protein S27