J3_8PPL_006
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)G*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 8PPL|1|A2|G|1256, 8PPL|1|A2|A|1258, 8PPL|1|A2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PPL|1|A2|C|1237
8PPL|1|A2|PSU|1238
8PPL|1|A2|U|1239
8PPL|1|A2|A|1240
8PPL|1|A2|A|1241
8PPL|1|A2|U|1242
8PPL|1|A2|U|1243
8PPL|1|A2|PSU|1244
8PPL|1|A2|G|1245
*
8PPL|1|A2|C|1254
8PPL|1|A2|G|1255
8PPL|1|A2|G|1256
8PPL|1|A2|G|1257
8PPL|1|A2|A|1258
8PPL|1|A2|A|1259
8PPL|1|A2|A|1260
8PPL|1|A2|C|1261
8PPL|1|A2|C|1262
8PPL|1|A2|U|1263
8PPL|1|A2|C|1264
8PPL|1|A2|A|1265
8PPL|1|A2|C|1266
*
8PPL|1|A2|G|1516
8PPL|1|A2|G|1517
8PPL|1|A2|C|1518
8PPL|1|A2|U|1519
8PPL|1|A2|G|1520
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AP
- 40S ribosomal protein S15
- Chain AQ
- 40S ribosomal protein S16
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- Ubiquitin-40S ribosomal protein S27a
Coloring options: