J3_8PPL_007

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GC(OMC)CGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

8PPL|1|A2|G|1274, 8PPL|1|A2|G|1507

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|G|1270
8PPL|1|A2|C|1271
8PPL|1|A2|OMC|1272
8PPL|1|A2|C|1273
8PPL|1|A2|G|1274
8PPL|1|A2|G|1275
8PPL|1|A2|A|1276
8PPL|1|A2|C|1277
*
8PPL|1|A2|G|1320
8PPL|1|A2|G|1321
8PPL|1|A2|G|1322
8PPL|1|A2|U|1323
8PPL|1|A2|G|1324
*
8PPL|1|A2|U|1504
8PPL|1|A2|U|1505
8PPL|1|A2|A|1506
8PPL|1|A2|G|1507
8PPL|1|A2|A|1508
8PPL|1|A2|U|1509
8PPL|1|A2|G|1510
8PPL|1|A2|U|1511
8PPL|1|A2|C|1512

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain AP

40S ribosomal protein S15

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a