J3_8PPL_008
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PPL_008 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4406
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PPL|1|A2|U|1340
8PPL|1|A2|C|1341
8PPL|1|A2|U|1342
8PPL|1|A2|U|1343
8PPL|1|A2|A|1344
8PPL|1|A2|G|1345
*
8PPL|1|A2|C|1384
8PPL|1|A2|G|1385
8PPL|1|A2|A|1386
8PPL|1|A2|G|1387
8PPL|1|A2|A|1388
8PPL|1|A2|C|1389
*
8PPL|1|A2|G|1481
8PPL|1|A2|C|1482
8PPL|1|A2|A|1483
8PPL|1|A2|A|1484
8PPL|1|A2|U|1485
8PPL|1|A2|A|1486
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein S2
- Chain AD
- 40S ribosomal protein S3
- Chain AQ
- 40S ribosomal protein S16
- Chain AR
- 40S ribosomal protein S17
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
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